Index (Sugar Removal Utility 1.5.0.0 API)

C

compareVersions(String, String) - Static method in class de.unijena.cheminf.deglycosylation.Main: Compares two version strings of the form "x.y.z" of variable length position by position after splitting at each "." and parsing to integers.

de.unijena.cheminf.deglycosylation - package de.unijena.cheminf.deglycosylation

execute() - Method in class de.unijena.cheminf.deglycosylation.SugarRemovalUtilityCmdApplication: Executes the application.

getInstance() - Static method in class org.openscience.cdk.cdkbook.SMILESFormatMatcher

isLegalTypeOfMoietiesToRemove(int) - Static method in class de.unijena.cheminf.deglycosylation.SugarRemovalUtilityCmdApplication: Checks whether the given integer number is mapped to a type of moieties to remove, i.e.

main(String[]) - Static method in class de.unijena.cheminf.deglycosylation.Main: Instantiates the SugarRemovalUtilityCmdApplication class and calls its execute() method.
Main - Class in de.unijena.cheminf.deglycosylation: Main entry point for the Sugar Removal Utility command-line application.
Main() - Constructor for class de.unijena.cheminf.deglycosylation.Main
matches(int, String) - Method in class org.openscience.cdk.cdkbook.SMILESFormatMatcher
matches(List<String>) - Method in class org.openscience.cdk.cdkbook.SMILESFormatMatcher

SMILESFormatMatcher - Class in org.openscience.cdk.cdkbook
SMILESFormatMatcher() - Constructor for class org.openscience.cdk.cdkbook.SMILESFormatMatcher
SugarRemovalUtilityCmdApplication - Class in de.unijena.cheminf.deglycosylation: Controller of the Sugar Removal Utility command-line application.
SugarRemovalUtilityCmdApplication(String[]) - Constructor for class de.unijena.cheminf.deglycosylation.SugarRemovalUtilityCmdApplication: Constructor that parses the command-line arguments and instantiates this class and the SugarRemovalUtility with the given settings.

VERSION - Static variable in class de.unijena.cheminf.deglycosylation.SugarRemovalUtilityCmdApplication: Version string of this class to print out if -v --version is queried from the command-line.

wasHelpOrVersionQueried() - Method in class de.unijena.cheminf.deglycosylation.SugarRemovalUtilityCmdApplication: Returns true if the -h --help or -v --version options were used at the command-line.